- 海洋科學學院/College of Marine Sciences(海科院)
- 海洋生物科技暨資源學系/Department of Marine Biotechnology and Resources
- 海洋環境及工程學系/Department of Marine Environment and Engineering
- 海洋科學系/Department of Oceanography
- 海下科技研究所/Institute of Undersea Technology
- 海洋事務研究所/Graduate Institute of Marine Affairs
- 海洋生態與保育研究所/Institute of Marine Ecology and Conservation
- 海洋生物科技博士學位學程/Doctoral Degree Program in Marine Biotechnology
- 新海研3號研究船/ R/V New Ocean Researcher 3